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MHC is also known as Major Histocompatibility Complex is a closely linked set of polymorphic genes that are coded for cell surface proteins which are highly essential for the adaptive immune system. This was discovered during Snell's experiments on transplantation. When the skin of blood group II containing mice were transplanted to some other blood group II containing mice, the skin was accepted, whereas on transplanting the skin of blood group II containing mice to some other blood group III containing mice, the skin was rejected. These MHC proteins were thus known to be very similar among all species but yet different or foreign enough to be recognized by an animal of different genetic backgrounds. Let’s discuss the difference between MHC class I and MHC class II.
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Key Takeaways: MHC proteins, MHC Class I protein, MHC Class II protein, Proteins, Blood group, Genes, Blood, T-cells
What is MHC?
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MHC is known as the Major Histocompatibility Complex which is a tightly linked clustered set of genes that code for proteins and are found on the surfaces of cells and help the adaptive body immune system to recognize any foreign matter. They are also required to present antigen for recognition by the appropriate T-cells.

Major Histocompatibility Complex
In humans, MHC or Major Histocompatibility Complex is known as Human Lymphocyte Antigen(HLA) Complex. Tissue rejection due to incompatibility masks the real function of the MHC molecules The real function of an MHC protein is to bind an antigen derived from self-proteins or pathogens and bring the antigen expression to the cell surface for recognition by the appropriate T-cells.
Also read: Proteins
MHC Protein Types
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MHC Proteins are classified into various types, two of them being the most prevalent-
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MHC Class I
MHC Class I molecules are one of the two primary classes of Major Histocompatibility Complex (MHC) molecules and are found on the cell surface of all nucleated cells in the bodies of all living beings or vertebrates. They also occur on platelets but are absent on red blood cells that lack nuclei. Their function is to display peptide fragments of proteins from within the cell to T-cells. This will trigger an immediate response from the immune system against a particular antigen presented by an MHC Class I protein. Because MHC Class I molecules present in peptides are derived from cytosolic proteins, the pathway of MHC Class I presentation is often called a cytosolic or endogenous pathway.

Differences between MHC Class I and MHC Class II Proteins
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MHC Class II
MHC Class II proteins belong to a primary class of MHC molecules and are present on antigen-presenting cells like dendritic cells, endothelial cells, B cells, thymic epithelial cells, and mononuclear phagocytes. These cells initiate immune responses and therefore, are crucial. Unlike MHC Class I antigens the peptides are not cytosolic, the antigens presented in MHC Class II peptides are derived from extracellular proteins. In humans, the MHC Class II protein complex is encoded by the Human Leukocyte Antigen(HLA) gene complex.
Also read: Nucleic acids
Differences between MHC Class I and MHC Class II Proteins
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The major differences between MHC Class I and MHC Class II proteins are follows:
| Point of difference | MHC Class I | MHC Class II |
|---|---|---|
| Structure | Consists of one membrane-spanning α chain produced by MHC genes, and one β chain produced by the β2-microglobulin gene. | Consists of two membrane-spanning chains, α and β both produced by MHC genes. |
| Building amino acids | Possess 8-10 amino acids | Possess 10-12 amino acids |
| Receptor T-cells | Present antigens to CD8+ T-cells. | Present antigens to CD4+ T-cells. |
| Location | Present on all cells in living beings that have a nucleus. | Has very limited tissue distribution and are mainly present in dendritic cells, B cells, mononuclear macrophages. |
| Peptide binding domains | α1 and α2 are peptide binding domains. | α1 and β1 are peptide binding domains. |
| Site of peptide loading to MHC | Endoplasmic reticulum | Specialized vesicular compartment |
| Enzymes required for peptide generation | Cytosolic Proteasome | Lysosomal and endosomal proteases |
| Origin of antigens | Endogenous | From extracellular proteins |
| Function | The presence of antigens targets the cell for destruction | Produces antibody due to presence of foreign antigen |
| Detection | Serology | Serology and mixed lymphocyte reactions |
Similarities Between MHC Class I vs. MHC Class II Proteins
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- Both the proteins are synthesized in the rough endoplasmic reticulum.
- They are found on the surface of APC surface.
- The expression of genes is co-dominant.
- These are encoded by genes in the HLA locus.
Also Read:
| Related Articles | ||
|---|---|---|
| Gene Regulation | Difference between gene and DNA | Vitamins |
| Translation | Transcription | Human Genome Project |
Things to Remember
- MHC is also known as Major Histocompatibility Complex which is a closely linked set of polymorphic genes that are coded for cell surface proteins and are very essential for the adaptive immune system. It was discovered in an experiment for tissue rejection during transplantation.
- In humans, the MHC or Major Histocompatibility Complex is known as the Human Lymphocyte Antigen(HLA) Gene Complex. In mice, the Major Histocompatibility Complex is known as the H2 complex.
- MHC Proteins are classified into two primary classes, two of them being- MHC Class I and MHC Class II.
- MHC Class I molecules are one of the two primary classes of Major Histocompatibility Complex (MHC) molecules and are found on the cell surface of all nucleated cells in the bodies of all living beings or vertebrates. They also occur on platelets but are absent on red blood cells that lack nuclei. Their function is to display peptide fragments of proteins from within the cell to T-cells.
- The function of MHC Class I molecules is to display peptide fragments of proteins from within the cell to T-cells. This will trigger an immediate response from the immune system against a particular antigen presented by an MHC Class I protein.
- MHC Class II proteins belong to a primary class of MHC molecules and are present on antigen-presenting cells like dendritic cells, endothelial cells, B cells, thymic epithelial cells, and mononuclear phagocytes.
Sample Questions
Ques. i) How many polypeptide chains make up MHC Class I?
ii) Which domains have an immunoglobulin-like structure?
iii) How many invariant chains are present in Class II? [3 marks]
Ans. i. Two polypeptide chains make up MHC Class I.
ii.The MHC II's domains α2 and β2 have an immunoglobulin-like structure.
iii. There are two invariant chains present in Class II.
Ques. What is the main role of MHC Class I and MHC Class II? [4 marks]
Ans. The main function of the MHC class II protein is to present the processed antigen that basically comes from the exogenous source to T-lymphocytes CD4(+). Thus, it causes the initiation of the immune response which is specific to the antigen. The function of MHC Class I protein is to expose the protein that lies within the cell to cytotoxic T-cells. This leads to the response from the immune system presented by MHC Class I protein.
Ques. State five differences between MHC Class I and MHC Class II protein. [5 marks]
Ans.
| Point of Difference | MHC Class I protein | MHC Class II protein |
|---|---|---|
| Structure | Consists of one membrane-spanning α chain produced by MHC genes, and one β chain produced by the β2-microglobulin gene. | Consists of two membrane-spanning chains, α and β both produced by MHC genes. |
| Building amino acids | Possess 8-10 amino acids | Possess 10-12 amino acids |
| Receptor T-cells | Present antigens to CD8+ T-cells. | Present antigens to CD4+ T-cells. |
| Location | Present on all cells in living beings that have a nucleus. | Has very limited tissue distribution and is mainly present in dendritic cells, B cells, mononuclear macrophages. |
| Peptide binding domains | α1 and α2 are peptide-binding domains. | α1 and β1 are peptide-binding domains. |
Ques. State four similarities between MHC Class II AND MHC Class I protein. [4 marks]
Ans. The similarities between MHC Class I and MHC Class II proteins are-
- The proteins are synthesized in the rough endoplasmic reticulum.
- They are found on the surface of APC surface.
- The expression of genes is co-dominant.
- These are encoded by genes in the HLA locus.
Ques.A tRNA is charged with the amino acid methionine.
i.Give the anticodon of this tRNA.
ii.Write the Codon for methionine.
iii.Name the enzyme responsible for the binding amino acid to tRNA. [3 marks]
Ans. i.The anticodon for this tRNA is UAC.
ii.The codon for methionine is AUG.
iii. The enzyme responsible for binding amino acids to tRNA is Amino-acyl tRNA synthetase.
Ques. A tRNA is charged with amino acid methionine.
I.At what site in the ribosome will the tRNA bind?
II.Give the anticodon of this tRNA?
III.What is the mRNA codon for methionine?
IV.Name the enzyme responsible for this binding? [4 marks]
Ans. i. The ribosome in the tRNA binds at the P-site.
ii.The anticodon of this tRNA is UAC.
iii. The mRNA codon for methionine is AUG.
iv.The enzyme responsible for binding amino acids to tRNA is Amino-acyl tRNA synthetase.
Ques. What are the three types of RNA & Mention their role in Protein Synthesis? [4 marks]
Ans. There are three types of RNA-
- Messenger RNA(mRNA)- This plays a great role in bringing DNA information to the ribosomes and also speeds up the production of proteins.
- Transfer RNA(tRNA) - The tRNA delivers the amino acids to the ribosomes and decodes a specific codon of its mRNA using its anticodon.
- Ribosomal RNA(rRNA) - It makes up the ribosome and assembles the proteins at the ribosome.
Ques. Mention any four important characteristics of the genetic code. [3 marks]
Ans. Genetic codon has the following important features -
- Each codon is a triplet consisting of three bases.
- Each codon is unambiguous, for only one amino acid.
- Amino acids are coded more than one codon is said to be degenerative.
- Codons are read in a continuous manner in direction.
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